Is this where ATP, NADH, and FADH2 get produced?
Yup! More carbon dioxide is released as well.
In the citric acid cycle, also known as Krebs cycle, the acetyl CoA combines with a four-carbon molecule and goes through a cycle of reactions to regenerate the four-carbon starting molecule.
What are their "empty" forms?
Their "empty" forms are NAD+ and FAD
In the last stage, oxidative phosphorylation, The NADH and FADH2 deposit their electrons in the electron transport chain, and turn back into their "empty" forms.
Then what do the protons do?
They flow back into the matrix through an enzyme called ATP synthase which uses the protein gradient created by ETC to synthesize ATP.
As electrons move down the chain, energy is released and used to pump protons out of the matrix, forming a gradient.
Wow!
At the end of the electron transport chain, oxygen accepts electrons and takes up protons to form water. Up to 38 molecules of ATP can be produced. The final equation is:C6H12O6 + 6O2 -> 6H20 + 6C02
I have one last question. Can any of these stages take place without oxygen?
That's a great question. Glycolysis can in fact take place without oxygen in a process called fermentation, since it is anaerobic. The other stages however, require oxygen in order to occur.
Thanks for explaining that to me! I found it really interesting!
It definitely is interesting, and my pleasure!